Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010734.1 Corchorus olitorius cultivar O-4 contig10766, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4683
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.32


Found at i:4557 original size:19 final size:18

Alignment explanation


    Indices: 4522--4560  Score: 60
    Period size: 19  Copynumber: 2.1  Consensus size: 18

       4512 CCTTGAGATT

                              
       4522 ATTCTTCAATGATCTTCA
          1 ATTCTTCAATGATCTTCA

                       *       
       4540 ATTCTTCAAATTATCTTCA
          1 ATTCTTC-AATGATCTTCA

              
       4559 AT
          1 AT

       4561 AAATCTTCAA


Statistics
Matches: 19,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  18    7  0.37
  19   12  0.63

ACGTcount: A:0.31, C:0.21, G:0.03, T:0.46


Consensus pattern (18 bp):   
ATTCTTCAATGATCTTCA
Done.