Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01010739.1 Corchorus olitorius cultivar O-4 contig10771, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35611

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1577--1618
15
2.7
15
92
3
66
64
14
9
11
1.50
9416--9544
35
3.6
35
77
8
136
38
17
15
28
1.90
9450--9551
37
2.8
37
80
7
127
38
16
14
30
1.89
9416--9551
72
1.9
73
89
7
215
38
16
15
29
1.90
11946--11970
2
12.5
2
100
0
50
48
0
0
52
1.00
13327--13373
2
23.5
2
95
0
85
46
0
2
51
1.13
17210--17290
35
2.3
36
85
10
114
28
17
17
37
1.92
27851--27890
21
1.9
21
89
0
62
20
35
20
25
1.96
28474--28527
22
2.5
21
82
5
63
14
3
27
53
1.58
28472--28536
21
3.0
21
82
4
76
12
3
29
55
1.52
34634--35341
125
5.7
125
91
1
1100
35
18
16
30
1.93
34634--35341
249
2.8
248
90
2
1098
35
18
16
30
1.93
34634--35341
374
1.9
374
91
1
1152
35
18
16
30
1.93
35406--35450
20
2.2
21
84
4
56
20
11
4
64
1.42
35451--35507
28
2.1
26
87
6
78
26
22
5
45
1.73

Tables:   1

The End!