Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01010753.1 Corchorus olitorius cultivar O-4 contig10785, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43246

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1747--1772
9
2.9
9
100
0
52
34
30
11
23
1.90
9862--9937
29
2.6
30
85
4
109
31
7
22
38
1.83
10478--10609
66
2.0
66
97
2
250
21
21
10
46
1.80
15673--15715
22
2.0
22
86
9
61
32
30
6
30
1.84
26398--26444
19
2.5
20
89
6
71
78
6
0
14
0.93
26482--26538
26
2.2
26
87
3
78
40
10
3
45
1.56
27637--27694
27
2.2
26
81
6
71
25
18
22
32
1.97
27643--27715
27
2.7
27
89
0
101
19
15
27
38
1.91
30664--30764
41
2.5
41
80
3
96
22
12
14
49
1.78
31880--31913
16
2.1
17
88
5
52
73
5
14
5
1.21
31908--31932
13
1.9
13
100
0
50
32
12
16
40
1.84
36812--36840
15
1.9
15
100
0
58
24
20
13
41
1.89
37154--37197
20
2.0
21
83
12
54
59
9
6
25
1.53
38450--38515
29
2.2
31
81
10
75
36
7
25
30
1.84

Tables:   1

The End!