Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01010754.1 Corchorus olitorius cultivar O-4 contig10786, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38234

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7321--7580
132
2.0
129
89
3
396
38
9
1
50
1.45
8525--8561
18
2.0
19
89
5
58
32
5
2
59
1.34
9276--9309
16
2.1
16
94
0
59
32
0
29
38
1.58
11557--11607
24
2.1
24
88
0
75
45
1
17
35
1.60
11580--11642
33
1.9
32
90
3
99
42
3
20
33
1.68
11643--11720
24
3.2
23
70
24
61
60
1
15
23
1.42
11514--11701
92
2.1
89
80
6
207
55
2
17
25
1.55
11713--11768
24
2.3
24
81
0
67
48
3
16
32
1.63
11698--11745
19
2.5
19
79
0
60
47
4
14
33
1.63
11556--11969
161
2.5
164
89
5
617
50
2
18
28
1.60
11741--12000
33
7.9
33
70
12
167
50
1
19
28
1.58
15126--15175
26
1.9
25
84
15
66
40
10
14
36
1.79
15827--15860
4
8.8
4
90
6
52
79
2
17
0
0.86
15826--15856
15
2.0
16
93
6
55
77
6
16
0
0.97
15827--15867
19
2.2
19
100
0
82
80
4
14
0
0.87
16397--16433
17
2.2
17
90
0
56
43
0
10
45
1.39
16452--16476
10
2.5
10
100
0
50
92
8
0
0
0.40
16705--16771
31
2.2
31
89
5
102
47
10
17
23
1.79
16901--17012
31
3.6
31
82
2
136
33
16
13
36
1.87
17140--17170
16
1.9
16
100
0
62
48
0
19
32
1.49
18048--18128
31
2.6
31
90
0
126
38
9
17
34
1.83
18247--18313
31
2.2
31
86
5
93
22
19
11
46
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20085--20117
2
16.5
2
100
0
66
51
0
0
48
1.00
23438--23580
33
4.7
32
71
15
122
47
3
18
30
1.65
23496--23546
24
2.1
24
85
0
66
45
5
15
33
1.71
25737--25814
23
3.2
25
70
20
74
57
2
17
21
1.52
25822--26081
33
7.9
33
67
10
120
51
3
16
27
1.61
26010--26081
34
2.2
33
87
2
99
50
1
16
31
1.54
27777--28898
564
2.0
564
92
1
1890
31
21
18
28
1.97
33397--33430
17
2.0
17
88
0
50
44
5
11
38
1.65
36501--36557
28
2.0
28
82
0
69
43
21
17
17
1.88
36925--36997
31
2.5
29
93
6
121
13
19
21
45
1.85

Tables:   1

The End!