Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010759.1 Corchorus olitorius cultivar O-4 contig10791, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4192
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.30


Found at i:1624 original size:9 final size:9

Alignment explanation


    Indices: 1610--1641  Score: 64
    Period size: 9  Copynumber: 3.6  Consensus size: 9

       1600 TCAGTTTGCC

                     
       1610 AAGAAATGA
          1 AAGAAATGA

                     
       1619 AAGAAATGA
          1 AAGAAATGA

                     
       1628 AAGAAATGA
          1 AAGAAATGA

                 
       1637 AAGAA
          1 AAGAA

       1642 GTGGTACAAT


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   23  1.00

ACGTcount: A:0.69, C:0.00, G:0.22, T:0.09


Consensus pattern (9 bp):   
AAGAAATGA
Done.