Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010761.1 Corchorus olitorius cultivar O-4 contig10793, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2605
ACGTcount: A:0.36, C:0.14, G:0.17, T:0.33


Found at i:2469 original size:15 final size:16

Alignment explanation


    Indices: 2440--2469  Score: 53
    Period size: 16  Copynumber: 1.9  Consensus size: 16

       2430 GTGTGAATTC

                            
       2440 AAATTGATCTTTTGAA
          1 AAATTGATCTTTTGAA

                           
       2456 AAATTGAT-TTTTGA
          1 AAATTGATCTTTTGA

       2470 TAAACTTACA


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  15    6  0.43
  16    8  0.57

ACGTcount: A:0.37, C:0.03, G:0.13, T:0.47


Consensus pattern (16 bp):   
AAATTGATCTTTTGAA
Done.