Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01010764.1 Corchorus olitorius cultivar O-4 contig10796, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51481

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29--73
5
9.0
5
86
13
58
75
0
0
24
0.80
32--71
3
14.7
3
80
19
52
75
0
0
25
0.81
1259--1314
24
2.4
23
84
3
76
35
5
8
50
1.57
1259--1314
12
4.8
12
81
14
57
35
5
8
50
1.57
5480--5983
184
2.8
184
85
1
638
31
18
16
32
1.94
12194--12307
59
1.9
58
96
1
210
26
32
25
15
1.96
12810--12847
18
2.1
18
95
0
67
36
28
23
10
1.88
14380--14409
15
1.9
15
93
6
51
53
10
13
23
1.69
14380--14410
16
1.9
16
93
0
53
54
9
12
22
1.67
16127--16181
28
2.0
28
92
0
92
38
14
29
18
1.90
25368--25702
184
1.8
183
83
3
449
33
17
17
32
1.93
28888--28921
11
3.1
11
100
0
68
52
0
0
47
1.00
39067--39100
8
4.1
8
92
3
50
32
14
2
50
1.58
48220--48440
108
2.0
109
92
2
365
32
23
19
25
1.97
49500--49541
20
2.0
21
86
4
59
23
21
16
38
1.93

Tables:   1

The End!