Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010765.1 Corchorus olitorius cultivar O-4 contig10797, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2610
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.30


Found at i:2027 original size:22 final size:22

Alignment explanation


    Indices: 1992--2033  Score: 57
    Period size: 22  Copynumber: 1.9  Consensus size: 22

       1982 CCAGCCAGCT

                           *      
       1992 CAGGCCGCGCGGGCCTGCGCAG
          1 CAGGCCGCGCGGGCCAGCGCAG

                    **          
       2014 CAGGCCGCTTGGGCCAGCGC
          1 CAGGCCGCGCGGGCCAGCGC

       2034 GCGGGCCACA


Statistics
Matches: 17,  Mismatches: 3, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  22   17  1.00

ACGTcount: A:0.10, C:0.40, G:0.43, T:0.07


Consensus pattern (22 bp):   
CAGGCCGCGCGGGCCAGCGCAG
Done.