Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01010768.1 Corchorus olitorius cultivar O-4 contig10800, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21531

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
960--1020
4
15.5
4
86
3
52
39
0
11
49
1.39
960--1014
12
4.6
12
83
0
65
38
0
12
49
1.41
2977--3007
15
2.1
15
100
0
62
38
12
25
22
1.90
3445--3494
22
2.2
23
78
3
57
36
8
2
54
1.42
3542--3679
70
2.0
70
97
0
258
44
8
10
36
1.69
11724--11768
24
1.9
23
82
13
56
60
4
26
8
1.46
11843--11906
25
2.6
24
80
9
67
43
6
0
50
1.27
12213--12262
24
2.1
24
92
0
82
46
14
18
22
1.84
13810--13886
3
25.7
3
75
5
57
22
38
5
33
1.76
13801--13886
30
2.9
29
82
3
91
20
38
6
33
1.80
13809--13886
21
3.9
20
75
11
79
21
38
6
33
1.79
16364--16392
12
2.3
13
94
5
51
20
24
17
37
1.93
19699--19730
2
16.0
2
100
0
64
50
0
0
50
1.00
20502--20566
33
2.0
33
90
3
105
9
20
24
46
1.79
20750--20780
9
3.3
9
95
4
53
45
12
29
12
1.80
21264--21310
18
2.6
19
83
9
64
27
23
0
48
1.51

Tables:   1

The End!