Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010769.1 Corchorus olitorius cultivar O-4 contig10801, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3836
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.34


Found at i:2082 original size:5 final size:5

Alignment explanation


    Indices: 2072--2097  Score: 52
    Period size: 5  Copynumber: 5.2  Consensus size: 5

       2062 ATGAAATAAT

                                           
       2072 TCAAA TCAAA TCAAA TCAAA TCAAA T
          1 TCAAA TCAAA TCAAA TCAAA TCAAA T

       2098 ATTACAAATA


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   21  1.00

ACGTcount: A:0.58, C:0.19, G:0.00, T:0.23


Consensus pattern (5 bp):   
TCAAA

Found at i:3800 original size:2 final size:2

Alignment explanation


    Indices: 3793--3834  Score: 84
    Period size: 2  Copynumber: 21.0  Consensus size: 2

       3783 TATTCAAGTA

                                                                          
       3793 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

       3835 TG


Statistics
Matches: 40,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   40  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
AT

Done.