Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010770.1 Corchorus olitorius cultivar O-4 contig10802, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4436
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32


Found at i:4250 original size:25 final size:25

Alignment explanation


    Indices: 4216--4263  Score: 87
    Period size: 25  Copynumber: 1.9  Consensus size: 25

       4206 CAAATCTCTA

                      *              
       4216 ATCTACCATGTAGTATAACAATGCC
          1 ATCTACCATGAAGTATAACAATGCC

                                   
       4241 ATCTACCATGAAGTATAACAATG
          1 ATCTACCATGAAGTATAACAATG

       4264 GTATATGTAA


Statistics
Matches: 22,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  25   22  1.00

ACGTcount: A:0.40, C:0.21, G:0.12, T:0.27


Consensus pattern (25 bp):   
ATCTACCATGAAGTATAACAATGCC
Done.