Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01010774.1 Corchorus olitorius cultivar O-4 contig10806, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  9218

Tables:   1   

This is table  1  of  1  ( 8 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43--123
39
2.0
40
90
2
128
38
3
7
50
1.48
1300--1369
25
2.8
25
95
0
122
31
27
17
24
1.97
4435--4654
22
10.0
22
76
7
153
39
18
10
30
1.85
4435--4654
44
5.0
44
72
9
173
39
18
10
30
1.85
4690--4759
22
3.2
22
76
15
72
37
18
4
40
1.71
4786--4847
22
2.8
22
87
0
97
32
11
14
41
1.81
4786--4887
44
2.3
44
86
0
132
30
11
13
44
1.80
5578--5623
19
2.4
19
92
0
74
50
6
21
21
1.71

Tables:   1

The End!