Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010777.1 Corchorus olitorius cultivar O-4 contig10809, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 15208
ACGTcount: A:0.35, C:0.16, G:0.20, T:0.29


Found at i:131 original size:18 final size:20

Alignment explanation


    Indices: 108--152  Score: 58
    Period size: 18  Copynumber: 2.4  Consensus size: 20

         98 AAAGGACAGA

                                
        108 ACACACATCACCAG-C-CAT
          1 ACACACATCACCAGCCACAT

                  *   *         
        126 ACACACCTCATCAGCCACAT
          1 ACACACATCACCAGCCACAT

                   
        146 ACACACA
          1 ACACACA

        153 CAAATCCACC


Statistics
Matches: 22,  Mismatches: 3, Indels: 2
        0.81            0.11        0.07

Matches are distributed among these distances:
  18   12  0.55
  19    1  0.05
  20    9  0.41

ACGTcount: A:0.40, C:0.44, G:0.04, T:0.11


Consensus pattern (20 bp):   
ACACACATCACCAGCCACAT
Done.