Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010778.1 Corchorus olitorius cultivar O-4 contig10810, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3393
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.34


Found at i:36 original size:21 final size:20

Alignment explanation


    Indices: 16--65  Score: 57
    Period size: 21  Copynumber: 2.5  Consensus size: 20

          6 ATACTGATTA

                                 
         16 ACTAATTACT-ATTCCTAATT
          1 ACTAATTACTCA-TCCTAATT

              *                  
         36 ACCAATTAACTCATCCTAATT
          1 ACTAATT-ACTCATCCTAATT

             *       
         57 AGTAATTAC
          1 ACTAATTAC

         66 CCAACTTATT


Statistics
Matches: 25,  Mismatches: 3, Indels: 4
        0.78            0.09        0.12

Matches are distributed among these distances:
  20    8  0.32
  21   16  0.64
  22    1  0.04

ACGTcount: A:0.38, C:0.22, G:0.02, T:0.38


Consensus pattern (20 bp):   
ACTAATTACTCATCCTAATT

Found at i:2900 original size:12 final size:12

Alignment explanation


    Indices: 2885--2912  Score: 56
    Period size: 12  Copynumber: 2.3  Consensus size: 12

       2875 AAAATTATCA

                        
       2885 AAAAAAATAAAT
          1 AAAAAAATAAAT

                        
       2897 AAAAAAATAAAT
          1 AAAAAAATAAAT

                
       2909 AAAA
          1 AAAA

       2913 TTTCGACCAG


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   16  1.00

ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14


Consensus pattern (12 bp):   
AAAAAAATAAAT
Done.