Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01010779.1 Corchorus olitorius cultivar O-4 contig10811, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6315

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
828--869
18
2.3
18
87
0
57
54
7
26
11
1.62
1505--1571
31
2.2
31
89
5
102
47
13
17
20
1.81
1639--1675
11
3.4
11
88
0
56
21
29
32
16
1.95
1703--1781
31
2.5
31
91
0
122
36
15
11
36
1.83
1701--1837
31
4.5
29
78
3
103
32
15
12
39
1.85
2817--2957
60
2.3
62
82
4
162
38
12
17
31
1.88
2817--2957
31
4.6
31
78
6
144
38
12
17
31
1.88
3087--3153
31
2.2
31
92
5
111
20
19
11
47
1.81
3738--3832
40
2.3
40
87
5
129
43
24
9
23
1.83
5984--6016
2
16.5
2
100
0
66
51
0
0
48
1.00

Tables:   1

The End!