Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01010780.1 Corchorus olitorius cultivar O-4 contig10812, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  101835

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
654--684
16
1.9
16
93
0
53
35
16
19
29
1.93
4860--4896
18
2.1
18
89
0
56
27
13
37
21
1.91
10700--11032
120
2.8
119
84
2
418
25
42
9
23
1.84
10971--11178
39
5.8
36
73
14
178
28
42
8
19
1.81
10995--11062
30
2.3
30
84
0
91
25
44
7
23
1.79
17232--17305
36
2.1
35
87
10
105
28
8
5
58
1.49
17612--17683
1
72.0
1
77
0
63
0
1
11
87
0.61
17607--17682
19
3.8
20
81
11
77
0
2
11
85
0.70
17612--17683
6
12.8
6
82
10
82
0
1
11
87
0.61
17614--17677
27
2.3
28
91
2
103
0
1
12
85
0.66
17607--17683
33
2.3
33
85
10
104
0
2
11
85
0.69
17612--17683
28
2.6
27
86
6
99
0
1
11
87
0.61
19318--19379
30
2.1
30
96
0
115
25
24
4
45
1.73
19568--19605
19
2.0
19
100
0
76
42
21
10
26
1.85
22442--22478
15
2.5
15
86
0
56
51
13
0
35
1.41
25517--25996
238
2.0
241
95
1
876
30
18
17
33
1.94
30791--30845
27
2.0
27
89
0
83
10
27
12
49
1.74
35943--35980
2
18.0
2
89
10
58
47
0
5
47
1.24
43779--43833
2
27.5
2
96
0
101
49
0
49
1
1.11
44925--44995
34
2.1
34
100
0
142
49
2
14
33
1.58
52305--52357
27
2.0
27
88
0
79
50
15
9
24
1.73
59794--59833
12
3.2
13
86
10
57
52
7
2
37
1.43
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
59794--59850
12
4.8
11
73
14
51
49
7
5
38
1.53
60247--60310
28
2.3
28
81
2
76
39
15
23
21
1.92
61221--61326
35
3.0
35
90
4
160
10
37
41
10
1.74
63766--63857
37
2.5
37
92
1
159
27
1
46
25
1.59
65602--65670
26
2.5
28
88
6
97
43
27
13
15
1.84
66043--66079
14
2.5
15
91
4
58
56
21
5
16
1.59
77368--77450
15
5.5
15
72
16
64
30
8
31
30
1.87
77368--77429
3
19.7
3
74
9
52
32
8
30
29
1.86
85794--85874
40
2.0
40
90
0
126
28
12
17
41
1.85
86269--86295
14
1.9
14
100
0
54
88
0
0
11
0.50
89201--89268
23
3.0
24
85
8
70
36
4
14
44
1.66
89215--89281
23
2.9
23
93
2
107
34
0
14
50
1.44
92607--92677
31
2.3
31
80
0
79
32
14
14
39
1.85
95963--96000
21
2.0
20
85
15
53
28
10
5
55
1.56
96284--96332
21
2.2
21
82
7
53
12
10
14
63
1.53

Tables:   1

The End!