Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01010785.1 Corchorus olitorius cultivar O-4 contig10817, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28891

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
19433--19497
21
3.1
21
100
0
130
67
4
9
18
1.35
21958--22027
36
1.9
36
97
0
131
22
8
7
61
1.49
24209--24285
41
1.9
39
82
10
93
41
5
2
50
1.38
25279--25531
22
11.6
22
70
15
125
40
9
16
33
1.81
25288--25444
44
3.5
44
75
8
138
39
8
17
34
1.81
25279--25424
66
2.2
66
82
0
175
40
8
16
34
1.80
25449--25542
22
4.3
22
77
8
66
43
8
17
30
1.78
25581--25685
22
4.8
22
72
14
83
32
11
18
38
1.86
25652--25743
22
4.2
22
80
2
78
35
10
14
39
1.81
25581--25731
65
2.3
66
80
5
155
32
11
17
38
1.86
25652--25767
44
2.6
44
81
0
133
32
11
15
40
1.83

Tables:   1

The End!