Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010789.1 Corchorus olitorius cultivar O-4 contig10821, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6877
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.30


Found at i:865 original size:25 final size:24

Alignment explanation


    Indices: 828--874  Score: 69
    Period size: 26  Copynumber: 1.9  Consensus size: 24

        818 CTAGAAAATT

                                      
        828 TGAAAAACTTTGATGGATGAGATGGA
          1 TGAAAAACTTTGAT-GAT-AGATGGA

                                  
        854 TGAAAAAC-TTGATGATAGATG
          1 TGAAAAACTTTGATGATAGATG

        875 AATAGAAGGA


Statistics
Matches: 21,  Mismatches: 0, Indels: 3
        0.88            0.00        0.12

Matches are distributed among these distances:
  23    5  0.24
  24    3  0.14
  25    5  0.24
  26    8  0.38

ACGTcount: A:0.40, C:0.04, G:0.28, T:0.28


Consensus pattern (24 bp):   
TGAAAAACTTTGATGATAGATGGA

Found at i:1753 original size:21 final size:21

Alignment explanation


    Indices: 1727--1768  Score: 75
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       1717 GCATCTTAGG

                                 
       1727 CAACTCCGATGAGCTTGAAAC
          1 CAACTCCGATGAGCTTGAAAC

                  *              
       1748 CAACTCTGATGAGCTTGAAAC
          1 CAACTCCGATGAGCTTGAAAC

       1769 TTCTTCCTTA


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   20  1.00

ACGTcount: A:0.33, C:0.26, G:0.19, T:0.21


Consensus pattern (21 bp):   
CAACTCCGATGAGCTTGAAAC
Done.