Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01010791.1 Corchorus olitorius cultivar O-4 contig10823, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35345

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6664--6731
22
3.1
22
93
2
111
19
38
26
16
1.92
6782--6833
21
2.5
21
73
17
54
25
36
28
9
1.87
8283--8326
21
2.1
21
83
8
54
22
4
9
63
1.42
13034--13104
26
2.7
26
91
4
106
18
21
21
39
1.93
16563--17202
67
9.8
66
84
3
454
35
14
22
26
1.93
16868--17202
64
5.2
64
86
1
438
35
15
23
25
1.94
17457--17709
62
4.1
62
88
0
355
37
12
22
26
1.90
18409--18435
8
3.4
8
100
0
54
37
0
33
29
1.58
22542--22597
24
2.3
24
100
0
112
57
8
33
0
1.30
26753--26911
59
3.0
50
74
22
137
33
15
15
36
1.88
26738--26889
59
2.5
61
89
5
245
33
14
14
37
1.87
26883--27241
39
8.9
39
83
7
450
31
15
15
37
1.89
26909--27241
81
4.1
81
85
4
458
31
15
15
37
1.89
26823--27244
162
2.5
164
85
6
534
31
15
15
37
1.89
32406--32466
25
2.5
24
84
10
70
27
16
42
13
1.85

Tables:   1

The End!