Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010794.1 Corchorus olitorius cultivar O-4 contig10826, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2728
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.35


Found at i:977 original size:303 final size:304

Alignment explanation


    Indices: 424--1031  Score: 914
    Period size: 303  Copynumber: 2.0  Consensus size: 304

        414 TGCTTCTCAA

                                                                  *          
        424 GCAGAAGAAGATGGTGAAATGTCGATGACTGAGGCACAAGTGTTCCACGTTTTTGTACTCTTCTT
          1 GCAGAAGAAGATGGTGAAATGTCGATGACTGAGGCACAAGTGTTCCACGTTTTTATACTCTTCTT

            *                   *   *        *   *                           
        489 TGCAATTGCTGACACACTTATGTTTTTTATATATAGGGTCTTCAAGAGTCTTCTTAACAAATGCA
         66 CGCAATTGCTGACACACTTAAGTTCTTTATATAAAGGATCTTCAAGAGTCTTCTTAACAAATGCA

                                    *                                     * *
        554 TCGTGACAAACTTTACCCAATACCTTGAGTTCACCGCAACAATTCTTAGTGACAGCTCCGATTTT
        131 TCGTGACAAACTTTACCCAATACCATGAGTTCACCGCAACAATTCTTAGTGACAGCTCCGATATA

                                  * * *         **     *    *        *       
        619 GAATATACTTGTGAAAACTTCCGTGGCACATGGCAGTTCCATTTTTGTTTTGCAATTGTTTTCCT
        196 GAATATACTTGTGAAAACTTCCCTCGAACATGGCAGACCCATTCTTGTCTTGCAATTATTTTCCT

                                       *     *          
        684 TAATAATCAAGTCCGGGTTTTCTGCAGGTGAAATGACTCCGCTT
        261 TAATAATCAAGTCCGGGTTTTCTGCAGCTGAAACGACTCCGCTT

                            *                     *        *                 
        728 GCAGAAGAAGATGGTGCAATGTCGATGACTGAGGCACATGTGTTCCATGTTTTTATACTCTTCTT
          1 GCAGAAGAAGATGGTGAAATGTCGATGACTGAGGCACAAGTGTTCCACGTTTTTATACTCTTCTT

                    *    * *                            *                    
        793 CGCAATTGTTGACTCGCTTAAG-TCTTTATATAAAGGATCTTCATGAGTCTTCTTAACAAATGCA
         66 CGCAATTGCTGACACACTTAAGTTCTTTATATAAAGGATCTTCAAGAGTCTTCTTAACAAATGCA

                                 *                   *                  *    
        857 TCGTGACAAACTTTACCCAATTCCATGAGTTCACCGCAACACTTCTTAGTGACAGCTCCGGTATA
        131 TCGTGACAAACTTTACCCAATACCATGAGTTCACCGCAACAATTCTTAGTGACAGCTCCGATATA

                                                                           * 
        922 GAATATACTTGTGAAAACTTCCCTCGAACA-GGCCAGACCCATTCTTGTCTTGCAATTATTTTGC
        196 GAATATACTTGTGAAAACTTCCCTCGAACATGG-CAGACCCATTCTTGTCTTGCAATTATTTTCC

                          *                              
        986 TTAATAATCAAGTCTGGGTTTTCTGCAGCTGAAACGACTCCGCTT
        260 TTAATAATCAAGTCCGGGTTTTCTGCAGCTGAAACGACTCCGCTT

             
       1031 G
          1 G

       1032 TTAAAACAAG


Statistics
Matches: 272,  Mismatches: 31, Indels: 3
        0.89            0.10        0.01

Matches are distributed among these distances:
 302    2  0.01
 303  192  0.71
 304   78  0.29

ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34


Consensus pattern (304 bp):   
GCAGAAGAAGATGGTGAAATGTCGATGACTGAGGCACAAGTGTTCCACGTTTTTATACTCTTCTT
CGCAATTGCTGACACACTTAAGTTCTTTATATAAAGGATCTTCAAGAGTCTTCTTAACAAATGCA
TCGTGACAAACTTTACCCAATACCATGAGTTCACCGCAACAATTCTTAGTGACAGCTCCGATATA
GAATATACTTGTGAAAACTTCCCTCGAACATGGCAGACCCATTCTTGTCTTGCAATTATTTTCCT
TAATAATCAAGTCCGGGTTTTCTGCAGCTGAAACGACTCCGCTT
Done.