Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01010796.1 Corchorus olitorius cultivar O-4 contig10828, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29950

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31--57
14
1.9
14
100
0
54
66
7
3
22
1.33
706--770
28
2.3
28
91
0
103
23
27
23
26
2.00
2482--2740
22
12.0
22
69
9
131
36
16
10
37
1.82
2493--2846
44
8.1
43
71
9
216
34
14
11
39
1.81
2792--2846
22
2.5
23
76
8
60
38
12
7
41
1.71
2800--2896
50
1.9
50
83
4
124
36
13
7
43
1.72
2953--3142
22
8.4
22
72
13
118
32
16
11
40
1.84
2953--3066
46
2.5
44
83
8
140
31
16
10
41
1.82
6622--6663
19
2.4
17
77
14
50
40
4
11
42
1.63
6630--6667
19
2.0
20
94
5
69
36
5
10
47
1.61
11381--11416
18
1.9
18
88
5
54
36
22
2
38
1.69
19088--19123
18
1.9
18
88
5
54
36
22
2
38
1.69
20976--21020
14
3.5
12
84
9
54
31
0
11
57
1.33
23766--23828
28
2.3
28
83
2
74
31
20
11
36
1.88
26120--26158
19
2.1
19
95
0
69
41
5
12
41
1.65
28031--28088
31
1.9
31
85
3
82
37
34
10
17
1.84

Tables:   1

The End!