Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010802.1 Corchorus olitorius cultivar O-4 contig10834, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4874
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.30


Found at i:4853 original size:18 final size:19

Alignment explanation


    Indices: 4830--4866  Score: 67
    Period size: 18  Copynumber: 2.0  Consensus size: 19

       4820 CACCCTAGCC

                               
       4830 CTAAAACTAGAAGA-AAAA
          1 CTAAAACTAGAAGAGAAAA

                               
       4848 CTAAAACTAGAAGAGAAAA
          1 CTAAAACTAGAAGAGAAAA

       4867 AGAAGAAG


Statistics
Matches: 18,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  18   14  0.78
  19    4  0.22

ACGTcount: A:0.65, C:0.11, G:0.14, T:0.11


Consensus pattern (19 bp):   
CTAAAACTAGAAGAGAAAA
Done.