Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01010811.1 Corchorus olitorius cultivar O-4 contig10843, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59681

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1794--1855
29
2.1
30
82
8
74
25
11
14
48
1.77
2222--2382
72
2.2
73
89
6
249
49
4
16
29
1.65
3553--3657
43
2.5
41
77
6
120
44
25
8
20
1.80
7446--7494
15
3.3
15
77
11
55
4
42
0
53
1.20
7744--8192
109
3.9
116
85
6
592
35
7
15
40
1.76
7971--8260
120
2.4
120
85
2
366
37
7
13
41
1.73
10380--10412
15
2.2
15
94
0
57
18
0
18
63
1.31
10884--10977
45
2.2
43
86
7
129
37
21
6
35
1.79
18426--18465
19
2.2
18
86
4
53
30
20
5
45
1.72
22897--22943
14
3.4
14
76
5
51
59
0
10
29
1.31
22758--23065
151
2.0
153
86
5
433
51
2
8
37
1.47
23040--23085
17
2.7
18
80
10
60
67
0
6
26
1.15
24543--24603
32
1.9
32
96
0
113
49
6
18
26
1.71
41226--41321
49
2.0
49
97
0
183
31
12
21
34
1.91
44280--44394
58
2.0
55
93
5
194
33
25
0
40
1.62
44457--44539
42
2.0
42
92
0
139
27
7
16
48
1.73
49332--49375
23
1.9
23
95
0
79
43
36
4
15
1.68
49594--49622
2
14.5
2
100
0
58
48
0
0
51
1.00
53266--53342
38
2.0
38
94
0
136
35
28
27
9
1.87
54670--54813
71
2.0
71
95
0
261
29
18
15
36
1.92
55268--55530
141
1.9
136
85
5
366
14
20
20
43
1.87
58131--58259
41
3.1
41
81
0
141
44
13
13
28
1.82

Tables:   1

The End!