Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010815.1 Corchorus olitorius cultivar O-4 contig10847, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3241
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27


Found at i:2242 original size:23 final size:23

Alignment explanation


    Indices: 2216--2262  Score: 94
    Period size: 23  Copynumber: 2.0  Consensus size: 23

       2206 GTGAAGTTTC

                                   
       2216 TGTTATAAGCGGATCATTTCCTT
          1 TGTTATAAGCGGATCATTTCCTT

                                   
       2239 TGTTATAAGCGGATCATTTCCTT
          1 TGTTATAAGCGGATCATTTCCTT

             
       2262 T
          1 T

       2263 ATTTCCACTG


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   24  1.00

ACGTcount: A:0.21, C:0.17, G:0.17, T:0.45


Consensus pattern (23 bp):   
TGTTATAAGCGGATCATTTCCTT
Done.