Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010819.1 Corchorus olitorius cultivar O-4 contig10851, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2250
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32


Found at i:854 original size:21 final size:21

Alignment explanation


    Indices: 829--962  Score: 191
    Period size: 21  Copynumber: 6.4  Consensus size: 21

        819 TTTAGGCAAT

                         *       
        829 TCCAATGAGCTTGAAACCTTC
          1 TCCAATGAGCTTGGAACCTTC

            *       *            
        850 ACCAATGATCTTGGAACCTTC
          1 TCCAATGAGCTTGGAACCTTC

                    *            
        871 TCCAATGAACTTGGAACCTTC
          1 TCCAATGAGCTTGGAACCTTC

                    *            
        892 TCCAATGAACTTGGAACCTTC
          1 TCCAATGAGCTTGGAACCTTC

                                  
        913 TCCAATGAGCTTGGAA-CTTGC
          1 TCCAATGAGCTTGGAACCTT-C

                                  
        934 TCCAATGAGCTTGGAA-CTTGC
          1 TCCAATGAGCTTGGAACCTT-C

                    
        955 TCCAATGA
          1 TCCAATGA

        963 ACTTCTAGCA


Statistics
Matches: 106,  Mismatches: 6, Indels: 2
        0.93            0.05        0.02

Matches are distributed among these distances:
  20    3  0.03
  21  103  0.97

ACGTcount: A:0.28, C:0.27, G:0.17, T:0.28


Consensus pattern (21 bp):   
TCCAATGAGCTTGGAACCTTC

Done.