Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010828.1 Corchorus olitorius cultivar O-4 contig10860, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4207
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30


Found at i:1809 original size:17 final size:17

Alignment explanation


    Indices: 1787--1820  Score: 68
    Period size: 17  Copynumber: 2.0  Consensus size: 17

       1777 AGACGTAGCC

                             
       1787 TTTTACTTTTACACCAT
          1 TTTTACTTTTACACCAT

                             
       1804 TTTTACTTTTACACCAT
          1 TTTTACTTTTACACCAT

       1821 AGTGTGATGA


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   17  1.00

ACGTcount: A:0.24, C:0.24, G:0.00, T:0.53


Consensus pattern (17 bp):   
TTTTACTTTTACACCAT

Found at i:2455 original size:25 final size:25

Alignment explanation


    Indices: 2427--2476  Score: 100
    Period size: 25  Copynumber: 2.0  Consensus size: 25

       2417 ATTGATCAAG

                                     
       2427 TAAGTTGACTCACCTATCTTATACA
          1 TAAGTTGACTCACCTATCTTATACA

                                     
       2452 TAAGTTGACTCACCTATCTTATACA
          1 TAAGTTGACTCACCTATCTTATACA

       2477 AAAGAGGTAC


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   25  1.00

ACGTcount: A:0.32, C:0.24, G:0.08, T:0.36


Consensus pattern (25 bp):   
TAAGTTGACTCACCTATCTTATACA
Done.