Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001083.1 Corchorus olitorius cultivar O-4 contig01083, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 739

Length: 1232
ACGTcount: A:0.28, C:0.16, G:0.17, T:0.40


Found at i:865 original size:12 final size:13

Alignment explanation


    Indices: 844--869  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

        834 TGGTGCCTCC

                         
        844 TTTTGTTTTTTTT
          1 TTTTGTTTTTTTT

                         
        857 TTTTGTTTTTTTT
          1 TTTTGTTTTTTTT

        870 GTCTTTTCTC


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.00, C:0.00, G:0.08, T:0.92


Consensus pattern (13 bp):   
TTTTGTTTTTTTT
Done.