Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01010831.1 Corchorus olitorius cultivar O-4 contig10863, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36112

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1064--1088
13
1.9
13
100
0
50
20
8
8
64
1.46
2606--2643
20
1.9
20
88
0
58
63
0
18
18
1.32
2682--3318
40
15.6
40
78
8
475
15
29
18
37
1.91
2687--3318
81
7.7
82
79
10
584
14
29
18
37
1.91
2726--3318
80
7.2
80
80
10
557
14
29
18
37
1.90
3164--3195
13
2.5
13
94
0
55
21
18
9
50
1.75
4284--4340
30
1.9
30
85
7
80
21
29
19
29
1.97
5270--5314
23
2.0
23
90
0
72
66
22
4
6
1.33
15174--15495
40
8.2
39
74
12
241
38
17
16
28
1.91
15216--15441
115
2.0
113
86
6
321
38
16
15
29
1.90
15330--15485
39
3.9
42
77
12
139
39
17
16
27
1.90
15334--15439
39
2.6
40
91
4
169
37
15
16
31
1.89
15532--15566
7
5.0
7
89
0
52
22
0
17
60
1.37
16049--16096
18
2.5
20
86
10
64
50
10
4
35
1.56
17776--17870
40
2.4
40
85
0
118
35
14
16
32
1.90
22513--22572
29
2.0
30
87
6
86
36
8
18
36
1.81
34280--34331
26
2.0
26
84
0
68
61
5
11
21
1.50

Tables:   1

The End!