Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01010836.1 Corchorus olitorius cultivar O-4 contig10868, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 6536
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Found at i:5193 original size:154 final size:154
Alignment explanation
Indices: 4782--6529 Score: 2577
Period size: 154 Copynumber: 11.3 Consensus size: 154
4772 ACCACAACTT
* * *
4782 GAAAGTCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCAAAGTGGACATATCTCACCTA
1 GAAAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACATATCTCACCAA
** * *
4847 AATGATTATAGTTAGTTCATAAACATTGGAAAGAAAAGCTTTGAGGTTTGCCAAATCGATGTCGA
66 AATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCTTTGAGGTTTGCCAAATCGAAGTCGA
* * *
4912 TTCAAAATGGAACTGATGTGCCCC
131 TTCAAAACGGAACTAATGGGCCCC
* *
4936 GAAAGGCCCAAAATAAGAAGTGTTCCAAATGAGCTAAAAAACTTCACAGTGGACATATCACACCA
1 GAAAGGCCCAAAATAACAAGTGTTCCAAATGAGCT-AAAAACTTCACAGTGGACATATCTCACCA
* * * * *
5001 AAATGATTATAGTTAGTCCATAAACACTGGAAAAAAAAGTTTTGAGGTTTGCTAAATCGAAGTCG
65 AAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCTTTGAGGTTTGCCAAATCGAAGTCG
* ** *
5066 ATTCAGAACGGATTTAATGGGCTCC
130 ATTCAAAACGGAACTAATGGGCCCC
* * * * * *
5091 GAAAGGCCCCAAATTACAATTGTTCCAACTGAGCAAAAAACTTCACAGTGGACATATCTTACCAA
1 GAAAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACATATCTCACCAA
5156 AATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCTTTGAGGTTTGCCAAATCGAAGTCGA
66 AATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCTTTGAGGTTTGCCAAATCGAAGTCGA
* * *
5221 TTAAAAATGGAAATAATGGGCCCC
131 TTCAAAACGGAACTAATGGGCCCC
* *
5245 GAAAGGCCCAAAATAAGAAGTGTTCCAAATTAGCTAAAAACTTCACAGTGGACATATCTCACCAA
1 GAAAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACATATCTCACCAA
*
5310 AATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCTTTGAGGTTTGCCAAATCGATGTCGA
66 AATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCTTTGAGGTTTGCCAAATCGAAGTCGA
* * *
5375 CTCAAAACGGATCTACTGGGCCCC
131 TTCAAAACGGAACTAATGGGCCCC
* *
5399 AAAAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTTACAGTGGACATATCTCACCAA
1 GAAAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACATATCTCACCAA
** * ** *
5464 AATGAAGATAGTTAGTCCATAAACAATGGAAA-AAAAATTTTGAGTTTTGCCAAATCGAAGTCGA
66 AATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCTTTGAGGTTTGCCAAATCGAAGTCGA
*
5528 TTCAAAACGGATCTAATGGGCCCC
131 TTCAAAACGGAACTAATGGGCCCC
* * * * *
5552 GAAAGGCCCAAAATTACAATTGTTCCAAAAGAGTTAAAAACTTCGCAGTGGACATATCTCACCAA
1 GAAAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACATATCTCACCAA
* *
5617 AATGATTATAGTTAGGCCTTAAACAATGGAAAGAAAAGCTTTGAGGTTTGCCAAATCGAATTCGA
66 AATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCTTTGAGGTTTGCCAAATCGAAGTCGA
*
5682 TTCAAAACGGATCTAATGGGCCCC
131 TTCAAAACGGAACTAATGGGCCCC
5706 GAAAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACATATCTCACCAA
1 GAAAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACATATCTCACCAA
*
5771 AATGATTATAGTCAGGCCATAAACAATGGAAAGAAAAGCTTTGAGGTTTGCCAAATCGAAGTCGA
66 AATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCTTTGAGGTTTGCCAAATCGAAGTCGA
* * * *
5836 TTCAAAATGGAAATGATGTGCCCC
131 TTCAAAACGGAACTAATGGGCCCC
* * *
5860 GAAAGGCCCAAAATAAGAAGTGTTCCAAATGAACTAAAAACTTCACAGTGGACATATCACACCAA
1 GAAAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACATATCTCACCAA
* *
5925 AATGATTATAGTTAGTCCATAAACAATGG-AAGAAAAGTTTTGAGGTTTGCCAAATCGAAGTCGA
66 AATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCTTTGAGGTTTGCCAAATCGAAGTCGA
** *
5989 TTCAAAACGGATTTAATGGGCTCC
131 TTCAAAACGGAACTAATGGGCCCC
* * * * * * *
6013 GAAAGGACCAAAATTACAATTGTTCCAAAAGAGCAAAAAACTTCACAATGGACATATCACACCAA
1 GAAAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACATATCTCACCAA
* **
6078 AATGATTATAATTAGGCCATAAACAAACGAAAGAAAAGCTTTGAGGTTTGCCAAATCGAAGTCGA
66 AATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCTTTGAGGTTTGCCAAATCGAAGTCGA
*
6143 TTCAAAATGGAACTAATGGGCCCC
131 TTCAAAACGGAACTAATGGGCCCC
* * *
6167 GAAAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTCCACAATGGAC-TAATCTCGCCA
1 GAAAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACAT-ATCTCACCA
** * *
6231 AAATGATTATAGTTAGTTCATAAACAAAGGAAAGAAAAACTTTGAGGTTTGCCAAATCGAAGTCG
65 AAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCTTTGAGGTTTGCCAAATCGAAGTCG
*
6296 ATTCAAAACAGAACTAATGGGCCCC
130 ATTCAAAACGGAACTAATGGGCCCC
* *
6321 GAAAGGTCCAAAATAACAAGTGTTCCAAATGAGATAAAAACTTCACAGTGGACATATCTCACCAA
1 GAAAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACATATCTCACCAA
* * * *
6386 AATGATTATTGTTAGGCCATAAACAACT-TAAAGAAAAGCTTTGAGGTTTGCCAAATCGAAGACA
66 AATGATTATAGTTAGGCCATAAACAA-TGGAAAGAAAAGCTTTGAGGTTTGCCAAATCGAAGTCG
*
6450 ATTCGAAAACGGAACTAGTGGGCCCCC
130 ATTC-AAAACGGAACTAATGGG-CCCC
* *
6477 GAAAGGCCCAAAATAAGAAGTGTTCCGAATGAGCTAAAAACTTCACAGTGGAC
1 GAAAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGAC
6530 TAATTTC
Statistics
Matches: 1430, Mismatches: 156, Indels: 14
0.89 0.10 0.01
Matches are distributed among these distances:
153 271 0.19
154 958 0.67
155 148 0.10
156 53 0.04
ACGTcount: A:0.40, C:0.18, G:0.19, T:0.22
Consensus pattern (154 bp):
GAAAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACATATCTCACCAA
AATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCTTTGAGGTTTGCCAAATCGAAGTCGA
TTCAAAACGGAACTAATGGGCCCC
Found at i:5676 original size:461 final size:461
Alignment explanation
Indices: 4782--6529 Score: 2665
Period size: 461 Copynumber: 3.8 Consensus size: 461
4772 ACCACAACTT
* * *
4782 GAAAGTCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCAAAGTGGACATATCTCACCTA
1 GAAAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACATATCTCACCAA
** * *
4847 AATGATTATAGTTAGTTCATAAACATTGGAAAGAAAAGCTTTGAGGTTTGCCAAATCGATGTCGA
66 AATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCTTTGAGGTTTGCCAAATCGAAGTCGA
* * *
4912 TTCAAAATGGAACTGATGTGCCCCGAAAGGCCCAAAATAAGAAGTGTTCCAAATGAGCTAAAAAA
131 TTCAAAACGGAACTGATGGGCCCCGAAAGGCCCAAAATAACAAGTGTTCCAAATGAGCT-AAAAA
*
4977 CTTCACAGTGGACATATCACACCAAAATGATTATAGTTAGTCCATAAACACTGGAAAAAAAAGTT
195 CTTCACAGTGGACATATCACACCAAAATGATTATAGTTAGTCCATAAACAATGGAAAAAAAA-TT
* * * * *
5042 TTGAGGTTTGCTAAATCGAAGTCGATTCAGAACGGATTTAATGGGCTCCGAAAGGCCCCAAATTA
259 TTGAGGTTTGCCAAATCGAAGTCGATTCAAAACGGATCTAATGGGCCCCGAAAGGCCCAAAATTA
** *
5107 CAATTGTTCCAACTGAGCAAAAAACTTCACAGTGGACATATCTTACCAAAATGATTATAGTTAGG
324 CAATTGTTCCAAAAGAGCAAAAAACTTCACAGTGGACATATCTCACCAAAATGATTATAGTTAGG
* *
5172 CCATAAACAATGGAAAGAAAAGCTTTGAGGTTTGCCAAATCGAAGTCGATTAAAAATGGAAATAA
389 CCATAAACAATGGAAAGAAAAGCTTTGAGGTTTGCCAAATCGAAGTCGATTCAAAATGGAACTAA
5237 TGGGCCCC
454 TGGGCCCC
* *
5245 GAAAGGCCCAAAATAAGAAGTGTTCCAAATTAGCTAAAAACTTCACAGTGGACATATCTCACCAA
1 GAAAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACATATCTCACCAA
*
5310 AATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCTTTGAGGTTTGCCAAATCGATGTCGA
66 AATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCTTTGAGGTTTGCCAAATCGAAGTCGA
* * *
5375 CTCAAAACGGATCT-ACTGGGCCCCAAAAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAA
131 TTCAAAACGGAACTGA-TGGGCCCCGAAAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAA
* * **
5439 CTTTACAGTGGACATATCTCACCAAAATGAAGATAGTTAGTCCATAAACAATGGAAAAAAAATTT
195 CTTCACAGTGGACATATCACACCAAAATGATTATAGTTAGTCCATAAACAATGGAAAAAAAATTT
*
5504 TGAGTTTTGCCAAATCGAAGTCGATTCAAAACGGATCTAATGGGCCCCGAAAGGCCCAAAATTAC
260 TGAGGTTTGCCAAATCGAAGTCGATTCAAAACGGATCTAATGGGCCCCGAAAGGCCCAAAATTAC
** *
5569 AATTGTTCCAAAAGAGTTAAAAACTTCGCAGTGGACATATCTCACCAAAATGATTATAGTTAGGC
325 AATTGTTCCAAAAGAGCAAAAAACTTCACAGTGGACATATCTCACCAAAATGATTATAGTTAGGC
* * * *
5634 CTTAAACAATGGAAAGAAAAGCTTTGAGGTTTGCCAAATCGAATTCGATTCAAAACGGATCTAAT
390 CATAAACAATGGAAAGAAAAGCTTTGAGGTTTGCCAAATCGAAGTCGATTCAAAATGGAACTAAT
5699 GGGCCCC
455 GGGCCCC
5706 GAAAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACATATCTCACCAA
1 GAAAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACATATCTCACCAA
*
5771 AATGATTATAGTCAGGCCATAAACAATGGAAAGAAAAGCTTTGAGGTTTGCCAAATCGAAGTCGA
66 AATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCTTTGAGGTTTGCCAAATCGAAGTCGA
* * * * *
5836 TTCAAAATGGAAATGATGTGCCCCGAAAGGCCCAAAATAAGAAGTGTTCCAAATGAACTAAAAAC
131 TTCAAAACGGAACTGATGGGCCCCGAAAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAAC
* *
5901 TTCACAGTGGACATATCACACCAAAATGATTATAGTTAGTCCATAAACAATGGAAGAAAAGTTTT
196 TTCACAGTGGACATATCACACCAAAATGATTATAGTTAGTCCATAAACAATGGAAAAAAAATTTT
* * *
5966 GAGGTTTGCCAAATCGAAGTCGATTCAAAACGGATTTAATGGGCTCCGAAAGGACCAAAATTACA
261 GAGGTTTGCCAAATCGAAGTCGATTCAAAACGGATCTAATGGGCCCCGAAAGGCCCAAAATTACA
* * *
6031 ATTGTTCCAAAAGAGCAAAAAACTTCACAATGGACATATCACACCAAAATGATTATAATTAGGCC
326 ATTGTTCCAAAAGAGCAAAAAACTTCACAGTGGACATATCTCACCAAAATGATTATAGTTAGGCC
**
6096 ATAAACAAACGAAAGAAAAGCTTTGAGGTTTGCCAAATCGAAGTCGATTCAAAATGGAACTAATG
391 ATAAACAATGGAAAGAAAAGCTTTGAGGTTTGCCAAATCGAAGTCGATTCAAAATGGAACTAATG
6161 GGCCCC
456 GGCCCC
* * *
6167 GAAAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTCCACAATGGAC-TAATCTCGCCA
1 GAAAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACAT-ATCTCACCA
** * *
6231 AAATGATTATAGTTAGTTCATAAACAAAGGAAAGAAAAACTTTGAGGTTTGCCAAATCGAAGTCG
65 AAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCTTTGAGGTTTGCCAAATCGAAGTCG
* * * *
6296 ATTCAAAACAGAACTAATGGGCCCCGAAAGGTCCAAAATAACAAGTGTTCCAAATGAGATAAAAA
130 ATTCAAAACGGAACTGATGGGCCCCGAAAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAA
* * * * **
6361 CTTCACAGTGGACATATCTCACCAAAATGATTATTGTTAGGCCATAAACAACT-TAAAGAAAAGC
195 CTTCACAGTGGACATATCACACCAAAATGATTATAGTTAGTCCATAAACAA-TGGAAA-AAAAAT
* * * *
6425 TTTGAGGTTTGCCAAATCGAAGACAATTCGAAAACGGAACTAGTGGGCCCCCGAAAGGCCCAAAA
258 TTTGAGGTTTGCCAAATCGAAGTCGATTC-AAAACGGATCTAATGGG-CCCCGAAAGGCCCAAAA
* * * * * *
6490 TAAGAAGTGTTCCGAATGAGCTAAAAACTTCACAGTGGAC
321 TTACAATTGTTCCAAAAGAGCAAAAAACTTCACAGTGGAC
6530 TAATTTC
Statistics
Matches: 1170, Mismatches: 108, Indels: 13
0.91 0.08 0.01
Matches are distributed among these distances:
460 1 0.00
461 837 0.72
462 97 0.08
463 187 0.16
464 48 0.04
ACGTcount: A:0.40, C:0.18, G:0.19, T:0.22
Consensus pattern (461 bp):
GAAAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACATATCTCACCAA
AATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCTTTGAGGTTTGCCAAATCGAAGTCGA
TTCAAAACGGAACTGATGGGCCCCGAAAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAAC
TTCACAGTGGACATATCACACCAAAATGATTATAGTTAGTCCATAAACAATGGAAAAAAAATTTT
GAGGTTTGCCAAATCGAAGTCGATTCAAAACGGATCTAATGGGCCCCGAAAGGCCCAAAATTACA
ATTGTTCCAAAAGAGCAAAAAACTTCACAGTGGACATATCTCACCAAAATGATTATAGTTAGGCC
ATAAACAATGGAAAGAAAAGCTTTGAGGTTTGCCAAATCGAAGTCGATTCAAAATGGAACTAATG
GGCCCC
Found at i:6142 original size:615 final size:615
Alignment explanation
Indices: 4789--6529 Score: 2646
Period size: 615 Copynumber: 2.8 Consensus size: 615
4779 CTTGAAAGTC
*
4789 CCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCA-AAGTGGACATATCTCACCTAAATGAT
1 CCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAA-TGGACATATCTCACCAAAATGAT
* * *
4853 TATAGTTAGTTCATAAACATTGGAAAGAAAAGCTTTGAGGTTTGCCAAATCGATGTCGATTCAAA
65 TATAGTTAGTCCATAAACAATGGAAAGAAAAGCTTTGAGGTTTGCCAAATCGAAGTCGATTCAAA
* * * *
4918 ATGGAACTGATGTGCCCCGAAAGGCCCAAAATAAGAAGTGTTCCAAATGAGCTAAAAAACTTCAC
130 ATGGAACTAATGGGCCCCGAAAGGCCCAAAATAACAAGTGTTCCAAATGAG-TTAAAAACTTCAC
* * * *
4983 AGTGGACATATCACACCAAAATGATTATAGTTAGTCCATAAACACTGGAAAAAAAAGTTTTGAGG
194 AGTGGACATATCTCACCAAAATGATTATAGTTAGTCCATAAACAATGGAAAGAAAAGCTTTGAGG
* * * * * * *
5048 TTTGCTAAATCGAAGTCGATTCAGAACGGATTTAATGGGCTCCGAAAGGCCCCAAATTACAATTG
259 TTTGCCAAATCGAAGTCGATTCAAAACGGATCTAATGGGCCCCGAAAGGCCCAAAATAACAAGTG
* * *
5113 TTCCAACTGAGCAAAAAACTTCACAGTGGACATATCTTACCAAAATGATTATAGTTAGGCCATAA
324 TTCCAAATGAGCTAAAAACTTCACAGTGGACATATCTCACCAAAATGATTATAGTTAGGCCATAA
*
5178 ACAATGGAAAGAAAAGCTTTGAGGTTTGCCAAATCGAAGTCGATTAAAAATGGAAATAATGGGCC
389 ACAATGGAAAGAAAAGCTTTGAGGTTTGCCAAATCGAAGTCGATTCAAAATGGAAAT-ATGGGCC
* *
5243 CCGAAAGGCCCAAAATAAGAAGTGTTCCAAATTAGCTAAAAACTTCACAGTGGACATATCTCACC
453 CCGAAAGGCCCAAAATAAGAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACATATCACACC
*
5308 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCTTTGAGGTTTGCCAAATCGATGTC
518 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCTTTGAGGTTTGCCAAATCGAAGTC
* *
5373 GACTCAAAACGGATCTACTGGGCCCCAAAAGGC
583 GACTCAAAACGGATCTAATGGGCCCCAAAAGGA
* * **
5406 CCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTTACAGTGGACATATCTCACCAAAATGAAG
1 CCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAATGGACATATCTCACCAAAATGATT
** *
5471 ATAGTTAGTCCATAAACAATGGAAA-AAAAATTTTGAGTTTTGCCAAATCGAAGTCGATTCAAAA
66 ATAGTTAGTCCATAAACAATGGAAAGAAAAGCTTTGAGGTTTGCCAAATCGAAGTCGATTCAAAA
* * * * * *
5535 CGGATCTAATGGGCCCCGAAAGGCCCAAAATTACAATTGTTCCAAAAGAGTTAAAAACTTCGCAG
131 TGGAACTAATGGGCCCCGAAAGGCCCAAAATAACAAGTGTTCCAAATGAGTTAAAAACTTCACAG
* *
5600 TGGACATATCTCACCAAAATGATTATAGTTAGGCCTTAAACAATGGAAAGAAAAGCTTTGAGGTT
196 TGGACATATCTCACCAAAATGATTATAGTTAGTCCATAAACAATGGAAAGAAAAGCTTTGAGGTT
*
5665 TGCCAAATCGAATTCGATTCAAAACGGATCTAATGGGCCCCGAAAGGCCCAAAATAACAAGTGTT
261 TGCCAAATCGAAGTCGATTCAAAACGGATCTAATGGGCCCCGAAAGGCCCAAAATAACAAGTGTT
*
5730 CCAAATGAGCTAAAAACTTCACAGTGGACATATCTCACCAAAATGATTATAGTCAGGCCATAAAC
326 CCAAATGAGCTAAAAACTTCACAGTGGACATATCTCACCAAAATGATTATAGTTAGGCCATAAAC
*
5795 AATGGAAAGAAAAGCTTTGAGGTTTGCCAAATCGAAGTCGATTCAAAATGGAAATGATGTGCCCC
391 AATGGAAAGAAAAGCTTTGAGGTTTGCCAAATCGAAGTCGATTCAAAATGGAAAT-ATGGGCCCC
*
5860 GAAAGGCCCAAAATAAGAAGTGTTCCAAATGAACTAAAAACTTCACAGTGGACATATCACACCAA
455 GAAAGGCCCAAAATAAGAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACATATCACACCAA
* *
5925 AATGATTATAGTTAGTCCATAAACAATGG-AAGAAAAGTTTTGAGGTTTGCCAAATCGAAGTCGA
520 AATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCTTTGAGGTTTGCCAAATCGAAGTCGA
* * * *
5989 TTCAAAACGGATTTAATGGGCTCCGAAAGGA
585 CTCAAAACGGATCTAATGGGCCCCAAAAGGA
* * * * *
6020 CCAAAATTACAATTGTTCCAAAAGAGCAAAAAACTTCACAATGGACATATCACACCAAAATGATT
1 CCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAATGGACATATCTCACCAAAATGATT
* * **
6085 ATAATTAGGCCATAAACAAACGAAAGAAAAGCTTTGAGGTTTGCCAAATCGAAGTCGATTCAAAA
66 ATAGTTAGTCCATAAACAATGGAAAGAAAAGCTTTGAGGTTTGCCAAATCGAAGTCGATTCAAAA
* * *
6150 TGGAACTAATGGGCCCCGAAAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTCCACAA
131 TGGAACTAATGGGCCCCGAAAGGCCCAAAATAACAAGTGTTCCAAATGAGTTAAAAACTTCACAG
* * * *
6215 TGGAC-TAATCTCGCCAAAATGATTATAGTTAGTTCATAAACAAAGGAAAGAAAAACTTTGAGGT
196 TGGACAT-ATCTCACCAAAATGATTATAGTTAGTCCATAAACAATGGAAAGAAAAGCTTTGAGGT
* * *
6279 TTGCCAAATCGAAGTCGATTCAAAACAGAACTAATGGGCCCCGAAAGGTCCAAAATAACAAGTGT
260 TTGCCAAATCGAAGTCGATTCAAAACGGATCTAATGGGCCCCGAAAGGCCCAAAATAACAAGTGT
* *
6344 TCCAAATGAGATAAAAACTTCACAGTGGACATATCTCACCAAAATGATTATTGTTAGGCCATAAA
325 TCCAAATGAGCTAAAAACTTCACAGTGGACATATCTCACCAAAATGATTATAGTTAGGCCATAAA
* * * * *
6409 CAACT-TAAAGAAAAGCTTTGAGGTTTGCCAAATCGAAGACAATTCGAAAACGGAACTAGTGGGC
390 CAA-TGGAAAGAAAAGCTTTGAGGTTTGCCAAATCGAAGTCGATTC-AAAATGGAAATA-TGGG-
*
6473 CCCCGAAAGGCCCAAAATAAGAAGTGTTCCGAATGAGCTAAAAACTTCACAGTGGAC
451 CCCCGAAAGGCCCAAAATAAGAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGAC
6530 TAATTTC
Statistics
Matches: 1017, Mismatches: 100, Indels: 14
0.90 0.09 0.01
Matches are distributed among these distances:
614 136 0.13
615 654 0.64
616 90 0.09
617 136 0.13
618 1 0.00
ACGTcount: A:0.40, C:0.18, G:0.19, T:0.23
Consensus pattern (615 bp):
CCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAATGGACATATCTCACCAAAATGATT
ATAGTTAGTCCATAAACAATGGAAAGAAAAGCTTTGAGGTTTGCCAAATCGAAGTCGATTCAAAA
TGGAACTAATGGGCCCCGAAAGGCCCAAAATAACAAGTGTTCCAAATGAGTTAAAAACTTCACAG
TGGACATATCTCACCAAAATGATTATAGTTAGTCCATAAACAATGGAAAGAAAAGCTTTGAGGTT
TGCCAAATCGAAGTCGATTCAAAACGGATCTAATGGGCCCCGAAAGGCCCAAAATAACAAGTGTT
CCAAATGAGCTAAAAACTTCACAGTGGACATATCTCACCAAAATGATTATAGTTAGGCCATAAAC
AATGGAAAGAAAAGCTTTGAGGTTTGCCAAATCGAAGTCGATTCAAAATGGAAATATGGGCCCCG
AAAGGCCCAAAATAAGAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACATATCACACCAAA
ATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCTTTGAGGTTTGCCAAATCGAAGTCGAC
TCAAAACGGATCTAATGGGCCCCAAAAGGA
Done.