Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01010845.1 Corchorus olitorius cultivar O-4 contig10877, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11803

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
126--172
6
8.2
6
81
9
53
78
0
21
0
0.75
126--172
11
4.2
11
81
5
58
78
0
21
0
0.75
3781--3856
11
6.9
11
74
16
68
0
21
0
78
0.74
3781--3859
7
10.7
7
75
17
54
0
21
0
78
0.75
3756--3856
48
2.1
50
83
10
129
0
24
1
72
1.02
8362--8396
2
18.0
2
88
5
54
45
2
0
51
1.16
8859--8974
44
2.6
45
91
4
182
4
15
9
70
1.29
8957--9027
25
2.9
24
68
4
70
9
15
7
67
1.40
9205--9259
3
18.3
3
100
0
110
32
0
0
67
0.91
9619--9675
26
2.1
27
83
3
71
42
7
5
45
1.53
9927--9978
10
5.1
10
86
4
77
59
3
0
36
1.16
9919--9978
31
1.9
31
96
0
111
61
5
0
33
1.17
9931--9978
21
2.3
20
85
3
69
60
4
0
35
1.16

Tables:   1

The End!