Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010852.1 Corchorus olitorius cultivar O-4 contig10884, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9429
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.35


Found at i:10 original size:2 final size:2

Alignment explanation


    Indices: 4--36  Score: 66
    Period size: 2  Copynumber: 16.5  Consensus size: 2

          1 TAT

                                                             
          4 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T

         37 TTGTGTAGTG


Statistics
Matches: 31,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   31  1.00

ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52


Consensus pattern (2 bp):   
TA

Found at i:7548 original size:2 final size:2

Alignment explanation


    Indices: 7541--7583  Score: 61
    Period size: 2  Copynumber: 21.5  Consensus size: 2

       7531 GTTAATCATA

                                      *                                    
       7541 AT AT AT AT AT AT AT ACT AA AT AT -T AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT A-T AT AT AT AT AT AT AT AT AT AT AT AT AT

             
       7583 A
          1 A

       7584 CACTAAATAT


Statistics
Matches: 37,  Mismatches: 2, Indels: 4
        0.86            0.05        0.09

Matches are distributed among these distances:
   1    1  0.03
   2   34  0.92
   3    2  0.05

ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47


Consensus pattern (2 bp):   
AT

Done.