Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010857.1 Corchorus olitorius cultivar O-4 contig10889, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5909
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.33


Found at i:5138 original size:21 final size:19

Alignment explanation


    Indices: 5113--5170  Score: 80
    Period size: 19  Copynumber: 2.9  Consensus size: 19

       5103 GCTGCTCTAA

                                 
       5113 TAATCTCATCTGTACAGTACC
          1 TAATCTCATCTGTACAGT--C

                  *           *
       5134 TAATCTAATCTGTACAGTG
          1 TAATCTCATCTGTACAGTC

                              
       5153 TAATCTCATCTGTACAGT
          1 TAATCTCATCTGTACAGT

       5171 TGCTAAACAG


Statistics
Matches: 34,  Mismatches: 3, Indels: 2
        0.87            0.08        0.05

Matches are distributed among these distances:
  19   17  0.50
  21   17  0.50

ACGTcount: A:0.29, C:0.22, G:0.12, T:0.36


Consensus pattern (19 bp):   
TAATCTCATCTGTACAGTC
Done.