Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010858.1 Corchorus olitorius cultivar O-4 contig10890, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5962
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29


Found at i:3057 original size:29 final size:25

Alignment explanation


    Indices: 3004--3054  Score: 102
    Period size: 25  Copynumber: 2.0  Consensus size: 25

       2994 CACACTACCG

                                     
       3004 TACCCGCCCGACCTGAGACTTTCTT
          1 TACCCGCCCGACCTGAGACTTTCTT

                                     
       3029 TACCCGCCCGACCTGAGACTTTCTT
          1 TACCCGCCCGACCTGAGACTTTCTT

             
       3054 T
          1 T

       3055 CTTGCTGGCG


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   26  1.00

ACGTcount: A:0.16, C:0.39, G:0.16, T:0.29


Consensus pattern (25 bp):   
TACCCGCCCGACCTGAGACTTTCTT

Found at i:5398 original size:28 final size:28

Alignment explanation


    Indices: 5366--5421  Score: 112
    Period size: 28  Copynumber: 2.0  Consensus size: 28

       5356 ACTCTACAAG

                                        
       5366 CACTAATCCTTTCCGCTTTGTCTGTTCA
          1 CACTAATCCTTTCCGCTTTGTCTGTTCA

                                        
       5394 CACTAATCCTTTCCGCTTTGTCTGTTCA
          1 CACTAATCCTTTCCGCTTTGTCTGTTCA

       5422 TTGGATTGAT


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  28   28  1.00

ACGTcount: A:0.14, C:0.32, G:0.11, T:0.43


Consensus pattern (28 bp):   
CACTAATCCTTTCCGCTTTGTCTGTTCA
Done.