Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010862.1 Corchorus olitorius cultivar O-4 contig10894, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 879

Length: 1465
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.34


Found at i:145 original size:21 final size:21

Alignment explanation


    Indices: 119--210  Score: 141
    Period size: 21  Copynumber: 4.4  Consensus size: 21

        109 TGCTAGAAGT

                                 *
        119 TCATTGGAGCAA-GTTCCAAGC
          1 TCATTGGAG-AAGGTTCCAAGA

                     *          *
        140 TCATTGGAGCAGGTTCCAAGT
          1 TCATTGGAGAAGGTTCCAAGA

                                 
        161 TCATTGGAGAAGGTTCCAAGA
          1 TCATTGGAGAAGGTTCCAAGA

                                 
        182 TCATTGGAGAAGGTTCCAAGA
          1 TCATTGGAGAAGGTTCCAAGA

                    
        203 TCATTGGA
          1 TCATTGGA

        211 AATGCCTAAG


Statistics
Matches: 66,  Mismatches: 4, Indels: 2
        0.92            0.06        0.03

Matches are distributed among these distances:
  20    1  0.02
  21   65  0.98

ACGTcount: A:0.29, C:0.17, G:0.27, T:0.26


Consensus pattern (21 bp):   
TCATTGGAGAAGGTTCCAAGA

Done.