Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01010865.1 Corchorus olitorius cultivar O-4 contig10897, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12340

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2298--2506
56
3.8
56
96
0
375
26
16
22
34
1.95
2493--2882
35
10.9
35
85
6
489
25
13
20
39
1.90
2493--2881
143
2.7
140
85
5
496
25
13
20
39
1.90
5274--5311
19
2.0
20
85
15
53
28
5
2
63
1.30
5484--5638
22
7.0
22
69
11
73
35
7
18
38
1.78
5647--5794
66
2.2
66
77
11
160
35
8
16
39
1.79
5647--5808
22
7.4
22
72
10
118
36
7
17
38
1.78
5905--5965
22
2.7
23
82
9
74
42
11
11
34
1.77
5905--6029
22
5.7
22
72
9
67
41
9
13
35
1.77
6156--6281
22
5.7
21
71
18
69
38
10
16
34
1.83
6180--6277
22
4.5
21
77
11
81
40
9
18
31
1.82
6252--6346
22
4.4
22
65
12
61
47
6
9
36
1.62
10627--10692
34
1.9
34
87
0
96
43
16
9
30
1.79

Tables:   1

The End!