Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01010867.1 Corchorus olitorius cultivar O-4 contig10899, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33305

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
416--440
2
12.5
2
100
0
50
52
0
0
48
1.00
1068--1098
2
16.0
2
93
6
55
48
0
0
51
1.00
1070--1095
13
2.0
13
100
0
52
46
0
0
53
1.00
1068--1097
15
2.0
15
100
0
60
46
0
0
53
1.00
8645--10001
438
3.1
437
85
3
1683
27
13
17
42
1.86
10111--10159
14
3.4
14
81
10
62
22
8
0
69
1.14
10104--10152
14
3.3
15
82
8
64
26
8
0
65
1.20
10188--10262
39
1.9
39
89
5
116
29
4
9
57
1.48
10251--10292
20
2.1
20
90
0
66
45
0
9
45
1.36
10436--10555
60
2.0
60
88
3
179
23
3
16
56
1.55
10818--10907
47
1.9
47
97
0
171
37
5
12
44
1.65
10897--10938
14
3.1
14
76
13
52
26
4
19
50
1.67
10986--11042
28
2.0
28
100
0
114
38
7
3
50
1.46
11235--11261
12
2.2
12
100
0
54
7
18
22
51
1.70
12161--12188
1
28.0
1
100
0
56
100
0
0
0
0.00
16101--16181
24
3.4
24
91
0
117
19
24
23
32
1.98
18146--18190
12
3.5
13
81
9
56
57
11
0
31
1.33
18600--18664
28
2.4
28
81
2
78
43
13
21
21
1.87
22091--22133
21
2.0
21
100
0
86
53
13
4
27
1.60
22568--22606
11
3.5
11
86
6
60
61
0
2
35
1.10
22774--22892
61
2.0
60
93
5
204
40
5
15
38
1.70
23538--23598
4
13.4
5
93
6
64
78
21
0
0
0.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23599--23658
30
2.0
30
100
0
120
46
23
13
16
1.82
24789--24814
7
3.7
7
100
0
52
15
11
26
46
1.80

Tables:   1

The End!