Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010871.1 Corchorus olitorius cultivar O-4 contig10903, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3762
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29


Found at i:2836 original size:23 final size:24

Alignment explanation


    Indices: 2806--2852  Score: 87
    Period size: 23  Copynumber: 2.0  Consensus size: 24

       2796 CTTCTTCTAT

                                    
       2806 TACTATAAGAGAGAA-AAGGTAGA
          1 TACTATAAGAGAGAACAAGGTAGA

                                    
       2829 TACTATAAGAGAGAACAAGGTAGA
          1 TACTATAAGAGAGAACAAGGTAGA

       2853 ATCTAGTATA


Statistics
Matches: 23,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
  23   15  0.65
  24    8  0.35

ACGTcount: A:0.51, C:0.06, G:0.26, T:0.17


Consensus pattern (24 bp):   
TACTATAAGAGAGAACAAGGTAGA

Found at i:2954 original size:22 final size:22

Alignment explanation


    Indices: 2929--2974  Score: 92
    Period size: 22  Copynumber: 2.1  Consensus size: 22

       2919 TGCTGGTCCA

                                  
       2929 TTTCCCTAGAGGAGGTTTTCTT
          1 TTTCCCTAGAGGAGGTTTTCTT

                                  
       2951 TTTCCCTAGAGGAGGTTTTCTT
          1 TTTCCCTAGAGGAGGTTTTCTT

              
       2973 TT
          1 TT

       2975 AGGTTAGCGC


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   24  1.00

ACGTcount: A:0.13, C:0.17, G:0.22, T:0.48


Consensus pattern (22 bp):   
TTTCCCTAGAGGAGGTTTTCTT
Done.