Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010872.1 Corchorus olitorius cultivar O-4 contig10904, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4132
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.27


Found at i:2917 original size:12 final size:12

Alignment explanation


    Indices: 2900--2929  Score: 51
    Period size: 12  Copynumber: 2.5  Consensus size: 12

       2890 TGTGCGTGGG

                        
       2900 TTTCATGTGCAT
          1 TTTCATGTGCAT

                      * 
       2912 TTTCATGTGCCT
          1 TTTCATGTGCAT

                  
       2924 TTTCAT
          1 TTTCAT

       2930 TGTAGGGTCT


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  12   17  1.00

ACGTcount: A:0.13, C:0.20, G:0.13, T:0.53


Consensus pattern (12 bp):   
TTTCATGTGCAT
Done.