Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010873.1 Corchorus olitorius cultivar O-4 contig10905, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6291
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29


Found at i:6116 original size:24 final size:24

Alignment explanation


    Indices: 6087--6133  Score: 85
    Period size: 24  Copynumber: 2.0  Consensus size: 24

       6077 CGGCGCCGGT

                       *            
       6087 AAGATAAAGTTCCAACTTTCAAAG
          1 AAGATAAAGTTACAACTTTCAAAG

                                   
       6111 AAGATAAAGTTACAACTTTCAAA
          1 AAGATAAAGTTACAACTTTCAAA

       6134 TACTACTCGA


Statistics
Matches: 22,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  24   22  1.00

ACGTcount: A:0.49, C:0.15, G:0.11, T:0.26


Consensus pattern (24 bp):   
AAGATAAAGTTACAACTTTCAAAG
Done.