Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010874.1 Corchorus olitorius cultivar O-4 contig10906, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 802

Length: 1337
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.26


Found at i:795 original size:25 final size:25

Alignment explanation


    Indices: 761--810  Score: 100
    Period size: 25  Copynumber: 2.0  Consensus size: 25

        751 AGGTCCCCAG

                                     
        761 TTCGATACATTAATAGAACTCTTAT
          1 TTCGATACATTAATAGAACTCTTAT

                                     
        786 TTCGATACATTAATAGAACTCTTAT
          1 TTCGATACATTAATAGAACTCTTAT

        811 CTTAGTCAAC


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   25  1.00

ACGTcount: A:0.36, C:0.16, G:0.08, T:0.40


Consensus pattern (25 bp):   
TTCGATACATTAATAGAACTCTTAT
Done.