Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010878.1 Corchorus olitorius cultivar O-4 contig10910, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 948

Length: 1581
ACGTcount: A:0.29, C:0.12, G:0.22, T:0.37


Found at i:33 original size:18 final size:18

Alignment explanation


    Indices: 10--46  Score: 56
    Period size: 18  Copynumber: 2.1  Consensus size: 18

          1 AAGAAAAAA

                     *        
         10 TTGAAAAAACAGAGGGGG
          1 TTGAAAAAAAAGAGGGGG

                        *     
         28 TTGAAAAAAAAGGGGGGG
          1 TTGAAAAAAAAGAGGGGG

             
         46 T
          1 T

         47 CAGTTTAGGG


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  18   17  1.00

ACGTcount: A:0.43, C:0.03, G:0.41, T:0.14


Consensus pattern (18 bp):   
TTGAAAAAAAAGAGGGGG
Done.