Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010879.1 Corchorus olitorius cultivar O-4 contig10911, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6565
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28


Found at i:4018 original size:21 final size:21

Alignment explanation


    Indices: 3992--4035  Score: 88
    Period size: 21  Copynumber: 2.1  Consensus size: 21

       3982 AGTCACCCGT

                                 
       3992 CTTTAGTGGAAATGGGTTTCA
          1 CTTTAGTGGAAATGGGTTTCA

                                 
       4013 CTTTAGTGGAAATGGGTTTCA
          1 CTTTAGTGGAAATGGGTTTCA

              
       4034 CT
          1 CT

       4036 CTCTGGTTGA


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   23  1.00

ACGTcount: A:0.23, C:0.11, G:0.27, T:0.39


Consensus pattern (21 bp):   
CTTTAGTGGAAATGGGTTTCA

Found at i:4188 original size:22 final size:22

Alignment explanation


    Indices: 4160--4203  Score: 88
    Period size: 22  Copynumber: 2.0  Consensus size: 22

       4150 CAAGATCGAC

                                  
       4160 TGAACACAAACCTTAATAGAGT
          1 TGAACACAAACCTTAATAGAGT

                                  
       4182 TGAACACAAACCTTAATAGAGT
          1 TGAACACAAACCTTAATAGAGT

       4204 GCCGATTCAT


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   22  1.00

ACGTcount: A:0.45, C:0.18, G:0.14, T:0.23


Consensus pattern (22 bp):   
TGAACACAAACCTTAATAGAGT
Done.