Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010890.1 Corchorus olitorius cultivar O-4 contig10922, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2278
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.33


Found at i:712 original size:21 final size:21

Alignment explanation


    Indices: 686--822  Score: 170
    Period size: 21  Copynumber: 6.4  Consensus size: 21

        676 TGCTAGAAGT

                                  
        686 TCATTGGAGCAA-GTTCCAAGC
          1 TCATTGGAG-AAGGTTCCAAGC

                                  
        707 TCATTGGAGCAA-GTTCCAAGC
          1 TCATTGGAG-AAGGTTCCAAGC

                                *
        728 TCATTGGAGAAGGTTCCAAGT
          1 TCATTGGAGAAGGTTCCAAGC

             *                  *
        749 TTATTGGAGAAGGTTCCAAGT
          1 TCATTGGAGAAGGTTCCAAGC

                                *
        770 TCATTGGAGAAGGTTCCAAGA
          1 TCATTGGAGAAGGTTCCAAGC

                 *                  
        791 TCATTAGAGAAGGTTTCAACAAGC
          1 TCATTGGAGAAGG-TTC--CAAGC

                    
        815 TCATTGGA
          1 TCATTGGA

        823 ATTGCCTAAG


Statistics
Matches: 105,  Mismatches: 7, Indels: 5
        0.90            0.06        0.04

Matches are distributed among these distances:
  20    2  0.02
  21   89  0.85
  22    3  0.03
  24   11  0.10

ACGTcount: A:0.31, C:0.17, G:0.26, T:0.27


Consensus pattern (21 bp):   
TCATTGGAGAAGGTTCCAAGC

Done.