Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010892.1 Corchorus olitorius cultivar O-4 contig10924, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 737

Length: 1229
ACGTcount: A:0.37, C:0.16, G:0.14, T:0.33


Found at i:1056 original size:333 final size:333

Alignment explanation


    Indices: 69--1179  Score: 1323
    Period size: 333  Copynumber: 3.4  Consensus size: 333

         59 TATTTGTTTC

                                   *      *              *   *        *  *   
         69 GATGAATATAGATATTTCAAGGAATTTTTGTGTCAAAAATCATGCGAAATTTAGTCGGGGCACCG
          1 GATGAATATAGATATTTCAAGGAGTTTTTGCGTCAAAAATCATGCAAAACTTAGTCGGCGCCCCG

                         * *         *                                       
        134 GAACGCGTTTTTAACAAAAAATAGTAATGGCTAGTACATGATTTCTGCTAAATTTTTGCAAAACT
         66 GAACGCGTTTTTAGCCAAAAATAGTGATGGCTAGTACATGATTTCTGCTAAATTTTTGCAAAACT

                                                  *                          
        199 AACCCGAAAAGATTTTCCTCAAACTTTTGCCACAATAGTCAGAAAAAATATATAATTCAACGCAA
        131 AACCCGAAAAGATTTTCCTCAAACTTTTGCCACAATAGCCAGAAAAAATATATAATTCAACGCAA

                    *                *                                       
        264 AAAAAAAATTTGAAGGATTTTTCGCGCTTCTAATATCGTTTTTCCATTTTTTT-CGAATTTATTT
        196 AAAAAAAAATTGAAGGATTTTTCGCTCTTCTAATATCGTTTTTCCATTTTTTTCCGAATTTATTT

                                       *                                     
        328 CTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCATATATTCAATGTGGTTGAG
        261 CTAATTAAATCGAAACAAGATTCAGATACTCGTAAAAACAAATCC-TATATTCAATGTGGTTGAG

                     
        393 ATTTTGTTA
        325 ATTTTGTTA

                                         *                *      * *         
        402 GATGAATATAGATATTTCAAGGAGTCTCTCTGC--CAAAAATCATGAAAAACTCAATCGGCGCCC
          1 GATGAATATAGATATTTCAAGGAGT-T-TTTGCGTCAAAAATCATGCAAAACTTAGTCGGCGCCC

                 *  *                         *              *               
        465 CGGAATGCATTTTTAGCCCAAAAATCA-TGATGGTTAGTACATGATTTCGGCT--A-------AA
         64 CGGAACGCGTTTTTAG-CCAAAAAT-AGTGATGGCTAGTACATGATTTCTGCTAAATTTTTGCAA

                *    **    *     *  *   *                                    
        520 AACTGACCAAAAAAATATTTTTCTAAAATTTTTGCCACAATA-CTCAGAAAAAATATATAATTCA
        127 AACTAACC-CGAAAAGATTTTCCTCAAACTTTTGCCACAATAGC-CAGAAAAAATATATAATTCA

              *           *     *  *      *                     *            
        584 ATGGC----AAAAAGATTGACGGGTTTTTCACTCATTCTAATATCGTTTTTCAATTTTTTTCCCG
        190 A-CGCAAAAAAAAAAATTGAAGGATTTTTCGCTC-TTCTAATATCGTTTTTCCATTTTTTT-CCG

                *    *   *          *              *  *                     *
        645 AATTAATTTTTAAATAAATCGAAAAAAGATTCAGAGATATTCAT-AAAACAAATCCTATTATTCT
        252 AATTTATTTCTAATTAAATCGAAACAAGATTC--AGATACTCGTAAAAACAAATCCTA-TATTCA

                 ***            *
        709 ATGTGACAGAGA-TTTGTTTC
        314 ATGTGGTTGAGATTTTG-TTA

                                             *           *   *        *  *   
        729 GATGAATATAGATATTTCAAGGAGTTTTTGCGTTAAAAATCATGCGAAATTTAGTCGGGGCTCCG
          1 GATGAATATAGATATTTCAAGGAGTTTTTGCGTCAAAAATCATGCAAAACTTAGTCGGCGCCCCG

                                                                             
        794 GAACGCGTTTTTAG-CAAAAATAGTGATGGCTAGTACATGATTTCTGCTAAATTTTTGCAAAACT
         66 GAACGCGTTTTTAGCCAAAAATAGTGATGGCTAGTACATGATTTCTGCTAAATTTTTGCAAAACT

                       *    *                                                
        858 AACCCGAAAAGCTTTTGCTCGAAA-TTTTGCCACAATAGCCAGAAAAAATATATAATTCAACGCA
        131 AACCCGAAAAGATTTTCCTC-AAACTTTTGCCACAATAGCCAGAAAAAATATATAATTCAACGCA

                                                  *                          
        922 AAAAAAAAAATTGAAGGATTTTTCGCTCTTCTAATATCATTTTTCCATTTTTTTCCGAATTTATT
        195 AAAAAAAAAATTGAAGGATTTTTCGCTCTTCTAATATCGTTTTTCCATTTTTTTCCGAATTTATT

                       *                *                                    
        987 TCTAATTAAATTGAAACAAGATTCAGATCCTCGTAAAAACAAATCCTTATATTCAATGTGGTTGA
        260 TCTAATTAAATCGAAACAAGATTCAGATACTCGTAAAAACAAATCC-TATATTCAATGTGGTTGA

                      
       1052 GATTTTGTTA
        324 GATTTTGTTA

                                     *       *                  *            
       1062 GATGAATATAGATATTTCAAGGAGTCTTT-CAGCCAAAAATCATGCAAAACTGAGTCGGCGCCCC
          1 GATGAATATAGATATTTCAAGGAGTTTTTGC-GTCAAAAATCATGCAAAACTTAGTCGGCGCCCC

             *  *                   *       *       **            
       1126 GAAATGCGTTTTTAGCCCAAAAATCGTGATGGTTAGTACACAATTTCTGCTAAA
         65 GGAACGCGTTTTTAG-CCAAAAATAGTGATGGCTAGTACATGATTTCTGCTAAA

       1180 AACTGACCCG


Statistics
Matches: 641,  Mismatches: 99, Indels: 74
        0.79            0.12        0.09

Matches are distributed among these distances:
 323   19  0.03
 324   26  0.04
 325   43  0.07
 326   85  0.13
 327   91  0.14
 328    7  0.01
 332   11  0.02
 333  198  0.31
 334   79  0.12
 335   61  0.10
 336   21  0.03

ACGTcount: A:0.36, C:0.16, G:0.15, T:0.33


Consensus pattern (333 bp):   
GATGAATATAGATATTTCAAGGAGTTTTTGCGTCAAAAATCATGCAAAACTTAGTCGGCGCCCCG
GAACGCGTTTTTAGCCAAAAATAGTGATGGCTAGTACATGATTTCTGCTAAATTTTTGCAAAACT
AACCCGAAAAGATTTTCCTCAAACTTTTGCCACAATAGCCAGAAAAAATATATAATTCAACGCAA
AAAAAAAAATTGAAGGATTTTTCGCTCTTCTAATATCGTTTTTCCATTTTTTTCCGAATTTATTT
CTAATTAAATCGAAACAAGATTCAGATACTCGTAAAAACAAATCCTATATTCAATGTGGTTGAGA
TTTTGTTA
Done.