Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010895.1 Corchorus olitorius cultivar O-4 contig10927, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2228
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.29


Found at i:719 original size:11 final size:13

Alignment explanation


    Indices: 692--723  Score: 50
    Period size: 11  Copynumber: 2.6  Consensus size: 13

        682 AAAATCATTT

                         
        692 ATAAAACATATTA
          1 ATAAAACATATTA

                         
        705 ATAAAACA-A-TA
          1 ATAAAACATATTA

                    
        716 ATAAAACA
          1 ATAAAACA

        724 GTTCCTCAAC


Statistics
Matches: 19,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  11   10  0.53
  12    1  0.05
  13    8  0.42

ACGTcount: A:0.69, C:0.09, G:0.00, T:0.22


Consensus pattern (13 bp):   
ATAAAACATATTA
Done.