Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010896.1 Corchorus olitorius cultivar O-4 contig10928, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4761
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27


Found at i:3069 original size:24 final size:24

Alignment explanation


    Indices: 3037--3085  Score: 98
    Period size: 24  Copynumber: 2.0  Consensus size: 24

       3027 CCTGGGGCCG

                                    
       3037 ATAAAATAAGAGACGAAGCTTTAC
          1 ATAAAATAAGAGACGAAGCTTTAC

                                    
       3061 ATAAAATAAGAGACGAAGCTTTAC
          1 ATAAAATAAGAGACGAAGCTTTAC

             
       3085 A
          1 A

       3086 AGGAGAGGGC


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   25  1.00

ACGTcount: A:0.51, C:0.12, G:0.16, T:0.20


Consensus pattern (24 bp):   
ATAAAATAAGAGACGAAGCTTTAC
Done.