Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010899.1 Corchorus olitorius cultivar O-4 contig10931, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3352
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.29


Found at i:2182 original size:71 final size:70

Alignment explanation


    Indices: 2110--2244  Score: 155
    Period size: 71  Copynumber: 1.9  Consensus size: 70

       2100 ATCGCCATTG

                                                                  *          
       2110 AAATACAAAAAGTTGTTACTCTAC-ATAGCGGAAAAACCTTAACAAGGAAATTCCACTCATAGAG
          1 AAATACAAAAAGTT-TTA-T-TACGATAGCGGAAAAACCTTAACAAGGAAATTCAACTCATAGAG

                    
       2174 CTCCTTGA
         63 CTCCTTGA

                ***            *       *  *                    *           
       2182 AAATGTGAAAAGTTTTATTTCGTATAGTGGGAAAACCTTAACAAGGAAATTTAACTCATAGAG
          1 AAATACAAAAAGTTTTATTACG-ATAGCGGAAAAACCTTAACAAGGAAATTCAACTCATAGAG

       2245 ATCATGAAAA


Statistics
Matches: 53,  Mismatches: 8, Indels: 5
        0.80            0.12        0.08

Matches are distributed among these distances:
  69    2  0.04
  70    1  0.02
  71   39  0.74
  72   11  0.21

ACGTcount: A:0.41, C:0.16, G:0.16, T:0.27


Consensus pattern (70 bp):   
AAATACAAAAAGTTTTATTACGATAGCGGAAAAACCTTAACAAGGAAATTCAACTCATAGAGCTC
CTTGA
Done.