Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000109.1 Corchorus olitorius cultivar O-4 contig00109, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 612

Length: 1020
ACGTcount: A:0.35, C:0.25, G:0.18, T:0.22


Found at i:836 original size:13 final size:13

Alignment explanation


    Indices: 794--840  Score: 53
    Period size: 13  Copynumber: 3.6  Consensus size: 13

        784 TCATGCACCC

                        * 
        794 AAAACAATTTATTT
          1 AAAACAATTTA-AT

                          
        808 AAAA-ACATTT-AT
          1 AAAACA-ATTTAAT

                         
        820 AAAACAATTTAAT
          1 AAAACAATTTAAT

                    
        833 AAAACAAT
          1 AAAACAAT

        841 AATAAAATAG


Statistics
Matches: 29,  Mismatches: 1, Indels: 7
        0.78            0.03        0.19

Matches are distributed among these distances:
  12    9  0.31
  13   12  0.41
  14    8  0.28

ACGTcount: A:0.60, C:0.09, G:0.00, T:0.32


Consensus pattern (13 bp):   
AAAACAATTTAAT
Done.