Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01010901.1 Corchorus olitorius cultivar O-4 contig10933, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45241

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6956--6998
19
2.3
19
87
0
59
37
6
0
55
1.27
7266--7294
2
14.5
2
100
0
58
51
0
0
48
1.00
9130--9182
22
2.3
23
81
15
65
54
5
15
24
1.62
10243--10607
30
12.0
30
88
2
516
29
19
21
30
1.97
14356--14384
13
2.3
13
94
5
51
17
6
0
75
1.01
14704--14828
28
4.5
28
90
0
160
17
16
24
41
1.89
20610--20681
33
2.2
33
94
0
126
26
25
4
44
1.72
42067--42095
9
3.3
9
95
4
51
44
0
20
34
1.52
42959--43011
12
4.4
12
92
0
88
33
47
0
18
1.49
42959--43011
24
2.2
24
100
0
106
33
47
0
18
1.49
43381--43521
49
2.9
46
82
9
151
26
15
6
51
1.68
44055--44142
18
4.9
18
88
0
131
25
40
21
12
1.88

Tables:   1

The End!