Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010902.1 Corchorus olitorius cultivar O-4 contig10934, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3241
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31


Found at i:659 original size:21 final size:20

Alignment explanation


    Indices: 633--745  Score: 145
    Period size: 21  Copynumber: 5.4  Consensus size: 20

        623 TGCTAGAAGT

                                *
        633 TCATTGGAGCAAGTTCCAAGG
          1 TCATTGGAG-AAGTTCCAAGC

                                 
        654 TCATTGGAGCAAGTTCCAAGC
          1 TCATTGGAG-AAGTTCCAAGC

                                *
        675 TCATTGGAGAAGGTTCCAAGT
          1 TCATTGGAGAA-GTTCCAAGC

                                *
        696 TCATTGGAGAAGGTTCCAAGT
          1 TCATTGGAGAA-GTTCCAAGC

                           *     
        717 TCATTGGAGAAGATTTCAAGC
          1 TCATTGGAGAAG-TTCCAAGC

                    
        738 TCATTGGA
          1 TCATTGGA

        746 ATTGCTTAAG


Statistics
Matches: 86,  Mismatches: 4, Indels: 4
        0.91            0.04        0.04

Matches are distributed among these distances:
  20    3  0.03
  21   83  0.97

ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27


Consensus pattern (20 bp):   
TCATTGGAGAAGTTCCAAGC

Done.